ARPHA expands client journal network to the Middle East

The Emirates Journal of Food and Agriculture (EJFA), a peer-reviewed scholarly outlet in agricultural and food sciences by the College of Agriculture and Veterinary Medicine, United Arab Emirates University (UAEU), has now become the first scientific journal from the Middle East to take advantage of the end-to-end scholarly publishing platform ARPHA and its diverse range of services.

Launched in 1989 to cover the areas of agriculture and food science, with a special emphasis on interdisciplinary studies, the open-access scientific journal has already begun publishing its 2024 content on its new ARPHA-powered website. The move comes as a result of a new partnership signed between the United Arab Emirates University and Pensoft: the scholarly publisher and technology innovator.

Since 2013, EJFA is also indexed by Web of Science. Its latest Journal Impact Factor is 1.1, while its Scopus CiteScore reads 1.9.

Launched in 2013, ARPHA is Pensoft’s in-house publishing platform, initially developed by the publisher as an all-round solution for its own journal portfolio. In 2016, ARPHA became available as a white-label solution, thereby allowing client journals to retain their owners as exclusive publishers, and keep their identities intact.

The move to ARPHA ensures a seamless, end-to-end publishing solution for EJFA that encompasses all stages from manuscript submission to article publication, indexation, dissemination, and archiving. The publishing services provided by ARPHA also include a variety of human-provided services and integrations with third-party providers, intended to maximise the reach and usability of scholarly knowledge published in EJFA.

“Together with ARPHA, we can achieve milestones in our journal publishing with ARPHA’s easy-to-use, open-access publishing platform backed with high-end functionalities.”

Abdul Jaleel, Editor-in-Chief of EJFA

EJFA publishes original research articles, review papers and short communications. It welcomes studies from a wide spectrum of agriculture and food disciplines, including sustainable agriculture systems, agricultural biotechnology, environmental impacts, food safety, and food engineering. 

Submissions to EJFA are subject to single-blind peer review. The journal operates a continuous publication model, which means that once accepted, papers go online as soon as they are typeset and ready for publication.

Due to ARPHA Platform’s technologically advanced and automated dissemination, indexing and archiving workflows, as well as its platform-level integrations with >60 leading databases, content published in EJFA is rapidly exported to dozens of platforms and widely used academic search portals, thereby becoming ever easier to discover, access, reuse and cite by audiences from all over the world.

EJFA has already published its first articles since the move. The journal’s backlist content all the way to the inaugural 1989 journal volume can be accessed from a link on the journal’s new website’s homepage. Conveniently, more recent content has been made available from the Articles space.

“It’s an honour to partner with an esteemed institution like the United Arab Emirates University. We are confident that in ARPHA Platform, our new partners will find a great fit for the immaculate professionalism, integrity and overall appeal of the Emirates Journal of Food and Agriculture,” says Pensoft’s CEO and founder Prof. Lyubomir Penev. “Being the first Middle Eastern journal to join ARPHA’s journal portfolio, EJFA has already become a very special client of ours.”

“We are really excited to partner with Pensoft and run the Emirates Journal of Food and Agriculture on the ARPHA platform. This decision by the UAEU will really help the journal to reach the next level with the experience of the Pensoft team and the high-end technology of ARPHA. We believe that this strategic partnership will boost the visibility and accessibility of our journal globally. Together with ARPHA, we can achieve milestones in our journal publishing with ARPHA’s easy-to-use, open-access publishing platform backed with high-end functionalities,” says EJFA’s Editor-in-Chief, Abdul Jaleel.

Pensoft collaborates with R Discovery to elevate research discoverability

Leading scholarly publisher Pensoft has announced a strategic collaboration with R Discovery, the AI-powered research discovery platform by Cactus Communications, a renowned science communications and technology company. This partnership aims to revolutionize the accessibility and discoverability of research articles published by Pensoft, making them more readily available on R Discovery to its over three million researchers across the globe.

R Discovery, acclaimed for its advanced algorithms and an extensive database boasting over 120 million scholarly articles, empowers researchers with intelligent search capabilities and personalized recommendations. Through its innovative Reading Feed feature, R Discovery delivers tailored suggestions in a format reminiscent of social media, identifying articles based on individual research interests. This not only saves time but also keeps researchers updated with the latest and most relevant studies in their field.

One of R Discovery’s standout features is its ability to provide paper summaries, audio readings, and language translation, enabling users to quickly assess a paper’s relevance and enhance their research reading experience significantly.

With over 2.5 million app downloads and upwards of 80 million journal articles featured, the R Discovery database is one of the largest scholarly content repositories.

At Pensoft, we do realise that Open Science is much more than cost-free access to research outputs. It is also about easier discoverability and reusability, or, in other words, how likely it is for the reader to come across a particular scientific publication and, as a result, cite and build on those findings in his/her own studies. By feeding the content of our journals into R Discovery, we’re further facilitating the discoverability of the research done and shared by the authors who trust us with their work,” said ARPHA’s and Pensoft’s founder and CEO Prof. Lyubomir Penev.

Abhishek Goel, Co-Founder and CEO of Cactus Communications, commented on the collaboration, “We are delighted to work with Pensoft and offer researchers easy access to the publisher’s high-quality research articles on R Discovery. This is a milestone in our quest to support academia in advancing open science that can help researchers improve the world.”

So far, R Discovery has successfully established partnership with over 20 publishers, enhancing the platform’s extensive repository of scholarly content. By joining forces with R Discovery, Pensoft solidifies its dedication to making scholarly publications from its open-access, peer-reviewed journal portfolio easily discoverable and accessible.

Brand new journal Estuarine Management and Technologies streamlines innovation in ecosystems conservation

Where freshwater rivers meet seas and oceans lies a scientifically intriguing and ecologically important type of ecosystem. As estuarine ecosystems provide various and diverse services to humanity and the planet at large, including food security and natural buffers and filters in the events of storms and water pollution, there has been an increasing need to facilitate and support the exchange of research findings and ideas related to their conservation and sustainable management by means of new-age technology and novel approaches.

This is how a team of renowned and passionate scientists, headed by Dr. Soufiane Haddout (Ibn Tofail University, Morocco), took the decision to launch a brand new open-access, peer-reviewed scholarly, aptly titled Estuarine Management and Technologies. They explain the rationale behind the journal in a new editorial, published to mark the official launch of the journal.

Having already worked closely with the scientific publisher and technology provider Pensoft on the fine touches of the concept of the new academic title, the team opted to use Pensoft’s publishing platform of ARPHA. As a result, the new journal provides a seamless, end-to-end publishing experience, encompassing all stages between manuscript submission and article publication, indexation, dissemination and permanent archiving. 

Within the collaboration between the journal’s and Pensoft’s teams, Estuarine Management and Technologies will take advantage of various services offered by the ARPHA platform, including full-text automated export in machine-readable and minable JATS-XML format to over 60 relevant databases for scientific literature and data; semantically enriched and multimedia-friendly publications accessible in HTML; and rich statistics about the outreach and usage of each published article and its elements (e.g. figures and tables), including views, downloads, online mentions, and citations. 

The publishing platform’s in-house indexing team will continue their close work with the journal’s editors to ensure that the scholarly outlet retains highest quality and integrity, so that it covers the criteria for indexation at additional key databases that require individual evaluation. In the meantime, ARPHA’s technical and editorial teams will provide technical and customer support to authors, editors and reviewers. The marketing and promotion team of ARPHA will be also joining forces with the journal to boost the visibility and image of the new academic title.

During the launch phase, content accepted for publication following double-blinded peer review will be made public right away for free to both authors and readers, where the journal will be operating under a continuous publication model.

Estuarine Management and Technologies welcomes studies from a wide spectrum of disciplines, including physics, chemistry, geology, biology, and hydrology, with a focus on interdisciplinarity, multifaceted approaches and holistic perspectives.

“One crucial aspect of estuarine management is the sustainable use of resources to balance conservation with human needs. Striking this delicate equilibrium requires a holistic understanding of the intricate web of ecological interactions within estuarine environments. Advanced technologies, such as isotopic techniques, environmental DNA (eDNA) analysis, can provide insights into the biodiversity of estuarine ecosystems with unprecedented precision,”

explain Dr Haddout and his colleagues in the opening editorial.

Amongst the unique features of the new journal are several additional publication types, such as Expert View, Video Paper, Rapid Communication, Mini Review and Estuarine Scientists, where these have been added to traditional publication outputs (e.g. Research Paper, Review Paper, Data Paper) to foster collaboration between researchers and other stakeholders in the field.

The journal is also running an annual Trailblazing Talent in Estuarine Management and Technologies award intended to recognise and encourage young scientists and engineers at the forefront of cutting-edge research in estuarine management and technologies. Nominations and applications are currently open.

Estuarine Management and Technologies also welcomes applications for guest editors in order to further expand the journal and its immediate expert network.

“I am delighted to see the Estuarine Management and Technologies journal already live on the ARPHA platform. We are confident that this particularly important, yet so far quite overlooked area of study will greatly benefit from this highly promising journal,”

says Prof. Lyubomir Penev, CEO and founder of Pensoft and ARPHA.

“I am pleased to announce the launch of the Estuarine Management and Technologies journal on ARPHA, a decision rooted in our commitment to advancing the field. We believe that this strategic partnership will not only enhance the visibility and accessibility of our journal, but will also foster collaboration and innovation within the estuarine management and technologies community. We expect this alliance to be a catalyst for scholarly excellence, providing a robust platform for researchers and practitioners to share insights, address challenges, and propel the field forward. Together with ARPHA, we are confident in the positive impact our journal will have on shaping the future of estuarine management and technologies.”

says Dr. Soufiane Haddout, Editor-in-Chief and founder, Estuarine Management and Technologies.

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You can visit the journal website and sign up for its newsletter from the homepage.

You can also follow Estuarine Management and Technologies on X (formerly Twitter).

ARPHA 2023: A year in review

ARPHA 2023 Review

2023 was a fantastic year for ARPHA, marked by a series of significant milestones and innovations in our scholarly publishing mission. As we reflect on the past year, we are excited to share the major strides taken by our dedicated in-house team to provide the best customised, end-to-end services for our clients.

Expansion of the ARPHA journal family

ARPHA welcomed new and diverse titles into its fold, demonstrating a commitment to promoting open-access research across many disciplines.

The Aquatic Invasions journal

This journal found a new home on ARPHA, enhancing its visibility and impact in the scientific community. Focused on biological invasions in both inland and coastal water ecosystems from around the world, Aquatic Invasions is an official journal of the International Association for Open Knowledge on Invasive Alien Species.

Atomic Layer Deposition

Catering to cutting-edge research in the field of material sciences, this journal launched on ARPHA in March. Atomic Layer Deposition targets scientists specialising in all aspects of Atomic Layer Deposition and related alternating vapour phase technologies.

Estuarine Management and Technologies

Another significant addition to our platform, this journal focuses on the technological facets of researching, managing, and preserving estuarine environments.

The addition of these titles is indicative of things to come, with more exciting entries expected to join ARPHA in 2024.

ARPHA’s strategic partnerships and integrations

ARPHA’s commitment to increasing the reach and impact of scientific research led to noteworthy collaborations in 2023.

ResearchGate integration

Our partnership with ResearchGate significantly boosted readership and visibility for our open-access publications; we saw a 2-5 times increase in article views for journals that opted in to have their context indexed. 20 Pensoft journals were indexed, including the flagship titles ZooKeys, PhytoKeys, MycoKeys, Biodiversity Data Journal and Research Ideas and Outcomes.

Scite.ai collaboration

This integration enhances the understanding of articles’ scientific impact and reuse, offering valuable insights to both readers and authors. With scite.ai, every citation is categorised as Supporting, Contrasting, or Mentioning, based on the context of surrounding sentences within the citing publication.

Enhancements and accolades

Our continuous efforts in tech infrastructure and design services yielded notable achievements and recognitions.

ARPHA PDF layout revamp

New ARPHA PDF layout
Research papers published in ZooKeys demonstrating the former (left) and the current (right) article layout seen in the PDF format. 

We introduced a modernised layout for the PDF format of articles, enriching the reading experience. The new format focuses on readability and accessibility, implementing many changes requested by the scientific community.

ARPHA Writing Tool and nanopublications

Our innovative XML-based authoring tool now supports a novel workflow for nanopublications in biodiversity research, piloted at the Biodiversity Data Journal.

European Reference Index for the Humanities and Social Sciences (ERIH PLUS)

Six of our journals proudly joined this index, including four Pensoft journals: Nature ConservationNeoBiotaNeotropical Biology and Conservationand Fossil Record. The Journal of the Bulgarian Geographical Society and the Amsterdam University Press’ Heritage, Memory and Conflict (HMC), which use ARPHA’s white-label publishing solution, were also accepted.

New on Scopus

The Bulgarian Society of Cardiology’s journal’s inclusion in Scopus marked a significant achievement. The journal met several criteria, including: immaculate peer review and editorial processes; a good and consistent yearly publication volume; high-quality and user-friendly website and infrastructure; well-pronounced internationality and inclusivity; and considerable readership and citation rates.

New on Web of Science

One Ecosystem‘s selection for inclusion in this index was a testament to its quality and integrity. The news means that One Ecosystem might see its very first Journal Impact Factor (JIF) as early as 2024, following the latest revision of the metric’s policies Clarivate announced last July. According to the update, all journals from the Web of Science Core Collection are now featured in the Journal Citation Reports, and thereby eligible for a JIF.

Keeping pace with scholarly publishing trends

Staying at the forefront of scholarly publishing, we continuously adapted to the latest best practices and addressed our clients’ needs.

ARPHA’s advisory role in journal comparison service

Pensoft’s involvement in developing the Journal Comparison Service by cOAlition S reflected our commitment to shaping the future of open-access publishing. The service freely and securely enables libraries, library consortia, and funders to understand if the fees they pay are commensurate with the publication services delivered.

EU’s conclusions on OA scholarly publishing

Our official statement aligned with the EU’s stance, emphasising our support for open-access initiatives. We highlighted the need to promptly address existing issues in the publishing system, so that healthy competition can thrive and contribute to a reality safe from monopolies and corporate capture.

Addressing ARPHA client needs

Our feature blog piece, “6 Common Mistakes at Society and Institutional Journals,” showcased our understanding and proactive approach to addressing the concerns of our clients.

As we progress into 2024, ARPHA remains dedicated to enhancing the scientific impact and visibility of our journals, leveraging technology and collaborations to serve the ever-evolving needs of the scholarly community. We thank our partners, clients, and contributors for being part of this exciting journey as we look forward to another successful year.

For news from & about ARPHA and the journals using the platform, you can follow us on Twitter and Linkedin.

Pensoft partners with Zendy to enhance academic accessibility

Zendy and Pensoft partnership

Pensoft has announced a partnership with Zendy, a leading online platform for free and affordable academic content. This collaboration marks a significant milestone in both companies’ efforts to make scientific research more accessible and widely disseminated.

Zendy has an extensive digital library that provides users with easy access to a wealth of academic materials, including journals, articles, and e-books. Their free online library, Zendy Open, collates quality open-access research and is available worldwide.

The partnership integrates Pensoft’s diverse range of high-quality, peer-reviewed journals into Zendy’s platform. This includes the publisher’s flagship titles ZooKeys, PhytoKeys, MycoKeys, Biodiversity Data Journal and Research Ideas and Outcomes (RIO Journal) amongst others, which will now have their content automatically added to the platform and freely accessible.

Zendy’s website, featuring key information about the platform.

Pensoft’s journals are powered by ARPHA and cover various fields of science, emphasising biodiversity, environmental, and ecological studies. By making content available on Zendy, Pensoft aims to support the academic community’s needs and foster an environment of discovery.

Zendy’s innovative platform, with user-friendly interface and advanced AI-powered features, enhances the research experience by simplifying the discovery and retrieval of relevant academic content. This aligns with Pensoft’s commitment to embracing technological advancements to improve the accessibility and impact of scientific research.

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For more information about Zendy, visit their website.
Follow Pensoft on X and Facebook to stay up to date with the publisher.

Smithsonian’s Dr Torsten Dikow appointed Editor-in-Chief of ZooKeys, a leading journal in systematic zoology and biodiversity

Esteemed entomologist specialising in true flies (order Diptera) and cybertaxonomy, Dr Torsten Dikow was appointed as the new Editor-in-Chief of the leading open-access peer-reviewed journal in systematic zoology and biodiversity ZooKeys.

Dikow is to step into the shoes of globally celebrated fellow entomologist and colleague at the Smithsonian and founding Editor-in-Chief of ZooKeys Dr Terry Erwin, who sadly passed away in May, 2020, leaving behind hefty scientific legacy and immeasurable admiration and fond memories

Today, Dikow is a Research Entomologist and Curator of Diptera and Aquatic Insects at the Smithsonian National Museum of Natural History (Washington, DC, USA), where his research interests encompass the diversity and evolutionary history of the superfamily Asiloidea – or asiloid flies – comprising curious insect groups, such as the assassin flies / robber flies and the mydas flies. Amongst an extensive list of research publications, Dikow’s studies on the diversity, biology, distribution and systematics of asiloid flies include the description of 60 species of assassin flies alone, and the redescription of even more through comprehensive taxonomic revisions.

Dikow obtained his M.S. in Zoology from the Universität Rostock (Germany) and Ph.D. in Entomology from Cornell University (New York, USA) with three years of dissertation research conducted at the American Museum of Natural History (AMNH). 

During his years as a postdoc at the Field Museum (Illinois, USA), Dikow was earnestly involved in the broader activities of the Encyclopedia of Life through its Biodiversity Synthesis Center (BioSynC) and the Biodiversity Heritage Library (BHL). There, he would personally establish contacts with smaller natural history museums and scientific societies, and encourage them to grant digitisation permissions to the BHL for in-copyright scientific publications. Dikow is a champion of cybertaxonomic tools and making biodiversity data accessible from both natural history collections and publications. He has been named a Biodiversity Open Data Ambassador by the Global Biodiversity Information Facility (GBIF).

Dikow is no stranger to ZooKeys and other journals published by the open-access scientific publisher and technology provider Pensoft. For the past 10 years, he has been amongst the most active editors and a regular author and reviewer at ZooKeysBiodiversity Data Journal and African Invertebrates.

“Publishing taxonomic revisions and species descriptions in an open-access, innovative journal to make data digitally accessible is one way we taxonomists can and need to add to the biodiversity knowledge base. ZooKeys has been a journal in support of this goal since day one. I am excited to lend my expertise and enthusiasm to further this goal and continue the development to publish foundational biodiversity research, species discoveries, and much more in the zoological field,”

said Dikow.

Dikow took on his new role at ZooKeys at a time when the journal had just turned 15 years on the scholarly publishing scene. In late 2020, the scientific outlet also marked the publication of its 1000th journal volume.

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Visit the journal’s website and follow ZooKeys on X (formerly Twitter) and Facebook. You can also follow Torsten Dikow on X.

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About ZooKeys:

ZooKeys is a peer-reviewed, open-access, rapidly disseminated journal launched to accelerate research and free information exchange in taxonomy, phylogeny, biogeography and evolution of animals. ZooKeys aims to apply the latest trends and methodologies in publishing and preservation of digital materials to meet the highest possible standards of the cybertaxonomy era.

ZooKeys publishes papers in systematic zoology containing taxonomic/faunistic data on any taxon of any geological age from any part of the world with no limit to manuscript size. To respond to the current trends in linking biodiversity information and synthesising the knowledge through technology advancements, ZooKeys also publishes papers across other taxon-based disciplines, such as ecology, molecular biology, genomics, evolutionary biology, palaeontology, behavioural science, bioinformatics, etc. 

Pensoft partners with ResearchGate to drive readership and visibility of open access journals

ResearchGate, the professional network for researchers, and Pensoft, an independent open access academic publisher known worldwide for its cutting-edge publishing tools and workflows, today announced a new partnership that will see a set of Pensoft’s open access journals increase their reach and visibility through ResearchGate – increasing access and engagement with its 25 million researcher members.  

Pensoft is a fully open access publisher, providing high-quality end-to-end services to its own and third-party scientific journals via its in-house developed scholarly publishing platform ARPHA.

As part of this new partnership, 20 journals published by Pensoft – including the publisher’s flagship titles ZooKeys, PhytoKeys, MycoKeys, Biodiversity Data Journal and Research Ideas and Outcomes (RIO Journal) amongst others – will now have their content automatically added to ResearchGate upon publication to benefit from enhanced visibility and discoverability through ResearchGate’s innovative Journal Home offering. These journals will all have dedicated profiles and be prominently represented on all associated article pages on ResearchGate, as well as all other relevant touch points throughout the network.

As part of this new partnership, 20 journals published by Pensoft will now have their content automatically added to ResearchGate upon publication to benefit from enhanced visibility and discoverability through ResearchGate’s innovative Journal Home offering.

Journal Home provides a unique opportunity for Pensoft to connect its authors with their readers. The new journal profiles on ResearchGate will provide a central location for each journal, enabling researchers to learn more, discover new article content, and understand how, through their network, they are connected to the journal’s community of authors and editors. Authors of these journals additionally benefit from having their articles automatically added to their ResearchGate profile page, giving them access to metrics, including who is reading and citing their research. These rich insights will also enable Pensoft to build a deeper understanding of the communities engaging with its journals. 

“Pensoft is delighted to be working with ResearchGate to provide an even greater service to our authors and readers. ResearchGate offers an innovative way for us to grow the reach and visibility of our content, while also giving us a way to better understand and engage our author and reader audiences,”

said Prof Lyubomir Penev, CEO and founder of Pensoft.

“We couldn’t be happier to see Pensoft embark on this new partnership with ResearchGate. Journal Home will not only enable Pensoft authors to build visibility for their work, but provide them and Pensoft with greater insights about the communities engaging with that research. I look forward to seeing this new collaboration develop.”

said Sören Hofmayer, co-founder and Chief Strategy Officer at ResearchGate.

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About ResearchGate:

ResearchGate is the professional network for researchers. Over 25 million researchers use researchgate.net to share and discover research, build their networks, and advance their careers. Based in Berlin, ResearchGate was founded in 2008. Its mission is to connect the world of science and make research open to all.

Pensoft and ARPHA partner with scite.ai to dig deeper into article citations

In the ever-evolving landscape of academic publishing, comprehensive and informative citation metrics can make all the difference. Pensoft, the scholarly publisher and technology provider, and the innovative scite.ai platform, have partnered to provide a novel service that is looking to change the way readers perceive and utilise citation data.

scite.ai has been making waves in the scholarly world with its pioneering approach to citation metrics. At the heart of their offering are two distinctive badges, elegantly displayed on the article’s page to let readers gain deeper insights into how a publication is cited by other indexed works. 

Each citation is categorized as Supporting, Contrasting, or Mentioning, based on the context of surrounding sentences within the citing publication. This way, anyone can explore not just how many times a document has been cited but also why.

The feature is already accessible under the Metrics tab of any research paper published by a Pensoft journal. The first scite.ai badge displays the number of citations, breaking them down into Supporting, Contrasting, or Mentioning; the second one offers insights on the sections of an article where the citations were featured.

At Pensoft, we are confident that this new functionality enhances the discoverability and contextual richness of articles published in our journals. The integration also  empowers Pensoft’s users to gain deeper insights into their research. Whether you’re a scientist seeking to validate your research or a reader in search of authoritative sources, this new feature promises to enrich your academic journey.

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Stay up to date with the latest integrations and features available at journals published by Pensoft by following ARPHA Platform on Twitter and Linkedin.

FAIRer knowledge about biodiversity with AI-friendly nanopublications at Biodiversity Data Journal

Earlier this year, in a pilot project, the teams of high-tech startup Knowledge Pixels and open-access scholarly publisher and technology provider Pensoft released a novel workflow to publicly share and future-proof scientific findings by means of nanopublications.

Nanopublications complement human-created narratives of scientific knowledge with elementary, machine-actionable, simple and straightforward scientific statements that prompt sharing, finding, accessibility, citability and interoperability. By making it easier to trace individual findings back to their origin and/or follow-up updates, it also helps to better understand the provenance of biodiversity data.

These semantic statements expressed in community-agreed terms, openly available through links to controlled vocabularies, ontologies and standards, are not only freely accessible to everyone in both human-readable and machine-actionable formats, but also easy-to-digest for computer algorithms and AI-powered assistants.

Now, the collaborators – also partly supported by the Horizon 2020-funded project BiCIKL (abbreviation for Biodiversity Community Integrated Knowledge Library) – have built up on a pilot workflow already launched in the Biodiversity Data Journal – to create a specialised nanopublication solution to address the need for FAIR (Findable, Accessible, Interoperable and Reusable) data in the biodiversity science domain. 

In their studies, researchers need to use and refer to extensive and diverse biodiversity data at once, e.g. information about groups of organisms and their classification, collections, authors and genetic sequences. However, those would normally be scattered across a vast number of articles or belong to dissociated databases. This is a major and widely recognised issue in biodiversity science, which is currently stagnating progress not only in building up the world’s knowledge about the natural world around us, but also impeding biodiversity conservation and ecosystem restoration.

Using the newly released nanopublication workflow, biodiversity researchers can now incorporate nanopublications within their manuscripts to future-proof their most important assertions on biological taxa and organisms or statements about associations of taxa or organisms and their environments. 

In addition, the authors can also create standalone nanopublications that comment or derive from already existing research journals published in an academic journal or another citable source (e.g. expert database), regardless of the author of the source. 

“With the nanopublication format, authors make sure that key scientific statements – the ones underpinning their research work – are efficiently communicated in a machine-actionable and FAIR manner. Thus, their contributions to science become future-proof for a reality driven by AI technology,”

explains Prof. Lyubomir Penev, founder and CEO at Pensoft.

“Biodiversity is the ideal field for this pilot exploring the next steps in scientific publishing. Biodiversity and its neighbouring fields have produced a remarkable number of high-quality resources, such as controlled vocabularies and databases, which we can now build upon. Moreover, many Biodiversity researchers have shown to be very open to such new methods and are enthusiastic about working together to build a more powerful ecosystem for scientific knowledge sharing, and we share their enthusiasm,”

says Tobias Kuhn, CTO and co-founder of Knowledge Pixels. 

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You can find more about the nanopublication workflow and its advantages to biodiversity scientists on the Pensoft blog and the Biodiversity Data Journal website.

ARPHA’s and Pensoft’s statement on the European Union’s Conclusions on OA scholarly publishing

On behalf of ARPHA Platform and Pensoft Publishers, we express our support for the Conclusions on high-quality, transparent, open and equitable scholarly publishing, recently published by the Council of the European Union. We do share all concerns articulated in the document that highlight major inequities and outstanding issues in the scholarly publishing environment.

In our opinion, it is of utmost importance to promptly address the existing issues in the publishing system, where healthy competition can thrive and contribute to a reality safe from potential mono-/oligopolies and corporate capture.

We firmly believe that only an industry that leaves room for variously-scaled pioneers and startups is capable of leading a long-awaited shift to a high-quality, transparent, open and equitable scholarly publishing landscape aligning with the principles of FAIRness.

Yet, we shall acknowledge that the industry has so far failed to eradicate the most fundamental flaw of the past. In the beginning, the main aim of the Open Access (OA) movement was removing the barrier to access to publicly funded scientific knowledge and scrapping costly subscription fees.

Recently, however, the industry’s biggest players merely replaced it with a barrier to publication by introducing costly Article Processing Charges (APCs) and “big deals” signed between top commercial publishers and academic institutions or national library consortia. 

As a result, small and middle-sized open-access publishers, which have, ironically, been the ones to lead the change and transition to OA by default and oppose the large commercial publishers’ agenda, were effectively pushed out of the scene. Further, we are currently witnessing a situation where OA funds are mostly going to the ones who used to oppose OA.

So, we strongly support measures that ensure an inclusive and FAIR competition, which could in turn prompt quality, sustainability and reasonable pricing in scholarly publishing. In our opinion, an environment like this would actually foster equality and equity amongst all publishers, either small, large, non-profit, commercial, institutional or society-based. 

One of the main points of the conclusions is a recommendation for a general use of the Diamond OA model, where no charges apply to either researchers or readers. While we fully support the Diamond OA model, we wish to stress on the fact that considerable concerns about the sustainability of existing Diamond OA models remain.

On the one hand, there are OA agreements (also known as read-and-publish, publish-and-read, transformative agreements etc.), typically signed between top publishers and top research institutions/consortia. This OA model is often mistakenly referred to as “Diamond OA”, since authors affiliated with those institutions are not concerned with providing the APC payment – either by paying themselves or applying for funding. Instead, the APCs are paid centrally. Most often, however, journals published by those publishers are still directly charging authors who are not members of the signed institutions with, in our opinion, excessive APCs. Even if those APCs are covered by a signed institution, these are still considerable funds that are being navigated away from actual research work. 

On the other hand, there are independent researchers, in addition to smaller or underfunded institutions, typically – yet far from exclusively – located in the developing world, who are effectively being discriminated against. 

In conclusion, this type of contracts are shutting away smaller actors from across academia just like they used to be under the subscription-based model. Hereby, we wish to express our full agreement with the Council of the European Union’s conclusion, that “it is essential to avoid situations where researchers are limited in their choice of publication channels due to financial capacities rather than quality criteria”.

There are also several alternative OA models designed to lessen the burden of publication costs for both individual researchers, libraries and journal owners. However, each comes with its own drawbacks. Here – we believe – is where the freedom of choice is perhaps most needed, in order to keep researchers’ and publishers’  best interests at heart. 

One of those alternatives is open-source publishing platforms, which – by design – are well-positioned to deliver actual Diamond OA for journals, while maintaining independence from commercial publishers. However, the operational model of this type of publishing and hosting platforms would most often only provide a basic infrastructure for editors to publish and preserve content. As a result, the model might require extra staff and know-how, while remaining prone to human errors. Additionally, a basic technological infrastructure could impede the FAIRness of the published output, which demands advanced and automated workflows to appropriately format, tag semantically and export scientific outputs promptly after publication.

Similarly, large funders and national consortia have put their own admirable efforts to step up and provide another option for authors of research and their institutions. Here, available funds are allocated to in-house Diamond OA publishing platforms that have originally been designed according to the policies and requirements of the respective funding programme or state. However, this type of support – while covering a large group of authors (e.g. based in a certain country, funded under a particular programme, and/or working in a specific research field) – still leaves many behind, including multinational or transdisciplinary teams. Additionally, due to the focus on ‘mass supply’, most of these OA publishing platforms have so far been unable to match their target user base with the appropriate scale of services and support.

What we have devised and developed at Pensoft with the aim to contribute to the pool of available choices is an OA publishing model, whose aim is to balance cost affordability, functionality, reliability, transparency and long-term sustainability. 

To do so, we work with journal owners, institutions and societies to create their own business and operational model for their journals that matches two key demands of the community: (1) free to read and free to publish OA model, and, (2) services and infrastructure suited for Diamond OA at a much lower cost, compared to those offered by major commercial publishers.

In our opinion, independent small publishers differentiate from both large commercial publishers and publicly funded providers by relying to a greater extent on innovative technology and close employee collaboration.

As a result, they are capable of delivering significantly more customisable solutions – including complete packages of automated and human-provided services – and, ultimately, achieving considerably lower-cost publishing solutions. Likewise, they might be better suited to provide much more flexible business models, so that libraries and journal owners can easily support (subsets of or all) authors to the best of their capabilities.

While we realise that there is no faultless way to high-quality, transparent, open and equitable scholarly publishing, we are firm supporters of an environment, where healthy competition prompts the continuous invention and evolution of tools and workflows

Our own motivation to invest in scholarly publishing technology and its continuous refinement and advancement, coupled with a number of in-house and manually provided services, which is reflected in our APC policies, aligns with the Council’s statement that “scientific practices for ensuring reproducibility, transparency, sharing, rigour and collaboration are important means of achieving a publishing system responsive to the challenges of democratic, modern and digitalised societies.”

Our thinking is that – much like in any other industry – what drives innovation and revolutionary technologies is competition. To remain healthy and even self-policing, however, this competition needs to embrace transparency, equity and inclusivity.

Last, but not least, researchers need to have the freedom to choose from plenty of options when deciding where and how to publish their work!